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  • Oncogenic IDH mutations increase heterochromatin-related replication stress without impacting tumor mutation burden

    Authors
    Schvartzman, Juan-Manuel
    Koche, Richard Patrick
    Thompson, Craig B.
    Description

    Summary from GEO: "Oncogenic mutations in the metabolic enzyme isocitrate dehydrogenase 1 and 2 (IDH1/2) have been found in a number of liquid and solid tumors. Their pathogenic mechanism of action involves production of 2-hydroxyglutarate (2HG), an oncometabolite that acts in part by inhibiting members of a family of dioxygenases that modulate chromatin dynamics. Recent work has suggested that mutant...

    Subject
    DNA Replication
    Heterochromatin
    Isocitrate Dehydrogenase
    Poly ADP Ribosylation
    Poly(ADP-ribose) Polymerase Inhibitors
    Access Rights
    Free to All
  • Expression analysis of 52 glioma clinical samples (36 CIMP+ and 16 CIMP-) and 6 cell line samples

    Authors
    Fang, Fang
    Chan, Timothy A.
    Description

    Summary from GEO: "Glioma CIMP (G-CIMP) is a powerful determinant of tumor pathogenicity but the molecular cause of G-CIMP is a fundamental question that is unresolved. Here, we show that mutation of a single gene, isocitrate dehydrogenase 1 (IDH1), directly causes the G-CIMP in gliomas by remodeling the methylome." Overall design from GEO: "In this study 52 glioma clinic samples (36 CIMP+ and...

    Subject
    Epigenome
    Gene Expression
    Glioma
    Isocitrate Dehydrogenase
    Mutation/genetics
    Access Rights
    Free to All
  • Methylation analysis of 81 glioma clinical samples (49 CIMP+ and 32 CIMP-) and 53 cell line samples

    Authors
    Fang, Fang
    Chan, Timothy A.
    Description

    Summary from GEO: "Glioma CIMP (G-CIMP) is a powerful determinant of tumor pathogenicity but the molecular cause of G-CIMP is a fundamental question that is unresolved. Here, we show that mutation of a single gene, isocitrate dehydrogenase 1 (IDH1), directly causes the G-CIMP in gliomas by remodeling the methylome." Overall design from GEO: "In this study 81 glioma clinic samples (49 CIMP+ and...

    Subject
    Epigenome
    Glioma
    Isocitrate Dehydrogenase
    Methylation
    Mutation/genetics
    Access Rights
    Free to All